equilibrator_api.compatibility
==============================

.. py:module:: equilibrator_api.compatibility

.. autoapi-nested-parse::

   Provide functions for compatibility with COBRA.





Module Contents
---------------

.. py:function:: map_cobra_reactions(cache: equilibrator_cache.CompoundCache, reactions: List[cobra.Reaction], **kwargs) -> Dict[str, equilibrator_api.phased_reaction.PhasedReaction]

   Translate COBRA reactions to eQuilibrator phased reactions.

   :param cache:
   :type cache: equilibrator_cache.CompoundCache
   :param reactions: A list of reactions to map to equilibrator phased reactions.
   :type reactions: iterable of cobra.Reaction

   :param kwargs: Any further keyword arguments are passed to the underlying function
                  for mapping metabolites.

   :returns: A mapping from COBRA reaction identifiers to equilibrator phased
             reactions where such a mapping can be established.
   :rtype: dict

   .. seealso:: :obj:`equilibrator_cache.compatibility.map_cobra_metabolites`